Publications

Discovering protein-DNA binding sequence patterns using association rule mining.

Leung, K.-S., Wong, K.-C., Chan, T.-M., Wong, M.-H., Lee, K.-H., Lau, C.-K., et al. (2010). Discovering protein-DNA binding sequence patterns using association rule mining. Nucleic acids research, 38(19), 6324-37. doi: 10.1093/nar/gkq500.

Data mining on DNA sequences of hepatitis B virus.

Leung, K.-S., Lee, K. H., Wang, J.-F., Ng, E. Y. T., Chan, H. L. Y., Tsui, S. K. W., et al. (2009). Data mining on DNA sequences of hepatitis B virus. IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM, 8(2), 428-40. Published by the IEEE CS, CI, and EMB Societies & the ACM. doi: 10.1109/TCBB.2009.6.

Detection of splicing events and multiread locations from RNA-seq data based on a geometric-tail (GT) distribution of intron length.

Lou, S.-K., Li, J.-W., Qin, H., Yim, A., Lo, L.-Y., Ni, B., et al. (2011). Detection of splicing events and multiread locations from RNA-seq data based on a geometric-tail (GT) distribution of intron length. BMC Bioinformatics, 12(Suppl 5), S2. doi: 10.1186/1471-2105-12-S5-S2.

ABMapper: a suffix array-based tool for multi-location searching and splice-junction mapping

Lou, S.-K., Ni, B., Lo, L.-Y., Tsui, S. K.-W., Chan, T.-F., & Leung, K.-S. (2011). ABMapper: a suffix array-based tool for multi-location searching and splice-junction mapping. Bioinformatics (Oxford, England), 27(3), 421-2. doi: 10.1093/bioinformatics/btq656.

An integrated web medicinal materials DNA database: MMDBD (Medicinal Materials DNA Barcode Database)

Lou, S.-K., Wong, K.-L., Li, M., But, P. P.-H., Tsui, S. K.-W., & Shaw, P.-C. (2010). An integrated web medicinal materials DNA database: MMDBD (Medicinal Materials DNA Barcode Database). BMC genomics, 11(1), 402. doi: 10.1186/1471-2164-11-402.